1.3. R client#


We discourage the use of the R client. It is not actively maintained and is not fully implemented. It can not (yet) be used to manage resources, such as creating and deleting users and organizations.

1.3.1. Install#

You can install the R client by running:


1.3.2. Use#

The R client can only create tasks and retrieve their results.

Initialization of the R client can be done by:

setup.client <- function() {
  # Username/password should be provided by the administrator of
  # the server.
  username <- "username@example.com"
  password <- "password"

  host <- 'https://cotopaxi.vantage6.ai:443'
  api_path <- ''

  # Create the client & authenticate
  client <- vtg::Client$new(host, api_path=api_path)
  client$authenticate(username, password)


# Create a client
client <- setup.client()

Then, this client can be used for the different algorithms. Refer to the README in the repository on how to call the algorithm. Usually this includes installing some additional client-side packages for the specific algorithm you are using.


This example shows how to run the vantage6 implementation of a federated Cox Proportional Hazard regression model. First you need to install the client side of the algorithm by:

devtools::install_github('iknl/vtg.coxph', subdir="src")

This is the code to run the coxph:

print( client$getCollaborations() )

# Should output something like this:
#   id     name

# Select a collaboration

# Define explanatory variables, time column and censor column
expl_vars <- c("Age","Race2","Race3","Mar2","Mar3","Mar4","Mar5","Mar9",
time_col <- "Time"
censor_col <- "Censor"

# vtg.coxph contains the function `dcoxph`.
result <- vtg.coxph::dcoxph(client, expl_vars, time_col, censor_col)