Index

_

__init__() (AlgorithmClient method) (AlgorithmStoreContext method) (AlgorithmStoreSubClient method) (AlgorithmSubClient method) (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AppContext method) (AuthStatus method) (BaseDatabase method) (BaseDatabaseSessionManager method) (BaseModelBase method) (BaseServerContext method) (ClickLogger method) (Configuration method) (ConfigurationManager method) (ContainerKillListener method) (CryptorBase method) (DatabaseType method) (DefaultDatasets method) (DummyCryptor method) (FileMetadata method) (InstanceType method) (LogLevel method) (Metric method) (Metrics method) (MockAlgorithmClient method) (NetworkManager method) (NodeConfiguration method) (NodeConfigurationManager method) (NodeContext method) (NodePolicy method) (OHDSIMetaData method) (OwnershipPreservingRotatingFileHandler method) (Page method) (Pagination method) (PermissionManagerBase method) (PolicySubClient method) (Ports method) (RabbitMQManager method) (ReviewSubClient method) (RoleInputSchema method) (RoleInterface method) (RSACryptor method) (RuleCollectionBase method) (RuleInterface method) (RuleNeed method) (RunMetaData method) (ServerConfiguration method) (ServerConfigurationManager method) (ServerContext method) (ServerGlobals method) (ServerRoleInputSchema method) (ServerType method) (Singleton method) (StorePolicies method) (StoreRoleSubClient method) (StoreRuleSubClient method) (StoreUserSubClient method) (StudySubClient method) (TaskStatus method) (TestConfiguration method) (TestContext method) (TestingConfigurationManager method) (TestResult method) (TestRunner method) (UserClient method) (WhoAmI method)

A

acquire() (OwnershipPreservingRotatingFileHandler method) add() (RuleCollectionBase method) add_col_to_table() (BaseDatabase method) add_organization() (StudySubClient method) (UserClient.Collaboration method) addError() (TestResult method) addExpectedFailure() (TestResult method) addFailure() (TestResult method) addFilter() (OwnershipPreservingRotatingFileHandler method) additional (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) addSkip() (TestResult method) addSubTest() (TestResult method) addSuccess() (TestResult method) addUnexpectedSuccess() (TestResult method) algo_store_configuration_questionaire() (in module vantage6.cli.configuration_wizard) algorithm_client() (in module vantage6.algorithm.tools.decorators) AlgorithmClient (class in vantage6.algorithm.client) AlgorithmClient.Collaboration (class in vantage6.algorithm.client) AlgorithmClient.Organization (class in vantage6.algorithm.client) AlgorithmClient.Result (class in vantage6.algorithm.client) AlgorithmClient.Run (class in vantage6.algorithm.client) AlgorithmClient.Study (class in vantage6.algorithm.client) AlgorithmClient.SubClient (class in vantage6.algorithm.client) AlgorithmClient.Task (class in vantage6.algorithm.client) AlgorithmClient.VPN (class in vantage6.algorithm.client)

AlgorithmError AlgorithmExecutionError AlgorithmInitializationError AlgorithmModuleNotFoundError AlgorithmRuntimeError AlgorithmStoreContext (class in vantage6.cli.context.algorithm_store) AlgorithmStoreSubClient (class in vantage6.client.subclients.store.algorithm_store) AlgorithmSubClient (class in vantage6.client.subclients.store.algorithm) AlgorithmViewPolicies (class in vantage6.common.enum) AlgoStoreGlobals (class in vantage6.cli.globals) AppContext (class in vantage6.common.context) appender() (PermissionManagerBase method) apply_user_filter() (in module vantage6.backend.common.resource.role) approve() (ReviewSubClient method) as_integer_ratio() (Ports method) assign_rule_to_fixed_role() (PermissionManagerBase method) assign_rule_to_root() (PermissionManagerBase method) authenticate() (AlgorithmClient method) (UserClient method) AuthenticationException AuthStatus (class in vantage6.common.globals) available_configurations() (AlgorithmStoreContext class method) (AppContext class method) (BaseServerContext class method) (NodeContext class method) (ServerContext class method) (TestContext class method)

B

BadRequestError base64s_to_bytes() (in module vantage6.common) base_path (AlgorithmClient property) (UserClient property) BaseDatabase (class in vantage6.backend.common.base) BaseDatabaseSessionManager (class in vantage6.backend.common.base) BaseModelBase (class in vantage6.backend.common.base)

BaseServerContext (class in vantage6.cli.context.base_server) bit_count() (Ports method) bit_length() (Ports method) bytes_to_base64s() (in module vantage6.common) bytes_to_str() (CryptorBase static method) (DummyCryptor static method) (RSACryptor static method)

C

can_delete_dependents() (in module vantage6.backend.common.resource.role) capitalize() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) casefold() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) center() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) change_my_password() (UserClient.Util method) check_config_name_allowed() (in module vantage6.cli.utils) check_default_role() (in module vantage6.backend.common.resource.role) check_docker_running() (in module vantage6.common.docker.addons) check_envvar_value_positive() (in module vantage6.algorithm.tools.util) check_if_blob_store_enabled() (AlgorithmClient method) (UserClient method) check_if_docker_daemon_is_running() (in module vantage6.cli.utils) check_user_rules() (PermissionManagerBase method) clear() (Configuration method) (NodeConfiguration method) (RuleCollectionBase method) (ServerConfiguration method) (TestConfiguration method) clear_session() (BaseDatabaseSessionManager static method) ClickLogger (class in vantage6.common) Client (in module vantage6.client) ClientError close() (OwnershipPreservingRotatingFileHandler method) collection() (PermissionManagerBase method) CollectOrganizationError CollectResultsError ColorStreamHandler (in module vantage6.common.colors) config_exists() (AlgorithmStoreContext class method) (AppContext class method) (BaseServerContext class method) (NodeContext class method) (ServerContext class method) (TestContext class method)

config_file (AlgorithmStoreContext property) (AppContext property) (BaseServerContext property) (NodeContext property) (ServerContext property) (TestContext property) config_file_name (AlgorithmStoreContext property) (AppContext property) (BaseServerContext property) (NodeContext property) (ServerContext property) (TestContext property) Configuration (class in vantage6.common.configuration_manager) configuration_wizard() (in module vantage6.cli.configuration_wizard) ConfigurationManager (class in vantage6.common.configuration_manager) configure_logger() (AlgorithmStoreContext static method) (AppContext static method) (BaseServerContext static method) (NodeContext static method) (ServerContext static method) (TestContext static method) conjugate() (Ports method) connect() (NetworkManager method) ContainerKillListener (class in vantage6.common.docker.addons) contains() (NetworkManager method) ConvergenceError copy() (RuleCollectionBase method) count() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (RuleNeed method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) (WhoAmI method) create() (AlgorithmClient.Task method) (AlgorithmStoreSubClient method) (AlgorithmSubClient method) (MockAlgorithmClient.Task method) (ReviewSubClient method) (StoreRoleSubClient method) (StudySubClient method) (UserClient.Collaboration method) (UserClient.Node method) (UserClient.Organization method) (UserClient.Role method) (UserClient.Task method) (UserClient.User method) create_network() (NetworkManager method) create_new_rsa_key() (RSACryptor static method) create_public_key_bytes() (RSACryptor static method) createLock() (OwnershipPreservingRotatingFileHandler method) CryptorBase (class in vantage6.common.encryption)

D

data() (in module vantage6.algorithm.tools.decorators) database_connection() (in module vantage6.algorithm.tools.decorators) databases (NodeContext property) DatabaseType (class in vantage6.algorithm.tools.wrappers) DataError DataReadError DataTypeError dateformat (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) datetimeformat (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) debug() (ClickLogger static method) (in module vantage6.common) decrypt() (CryptorBase method) (DummyCryptor method) (RSACryptor method) decrypt_bytes_blob_storage() (RSACryptor method) decrypt_str_to_bytes() (RSACryptor method) decrypt_stream() (CryptorBase method) (DummyCryptor method) (RSACryptor method) DefaultDatasets (class in vantage6.cli.globals) delete() (AlgorithmStoreSubClient method) (AlgorithmSubClient method) (NetworkManager method) (ReviewSubClient method) (StoreRoleSubClient method) (StoreUserSubClient method) (StudySubClient method) (UserClient.Collaboration method) (UserClient.Node method) (UserClient.Organization method) (UserClient.Role method) (UserClient.Task method) (UserClient.User method)

delete_network() (in module vantage6.common.docker.addons) delete_volume_if_exists() (in module vantage6.common.docker.addons) denominator (Ports attribute) DeserializationError DeserializationException (in module vantage6.algorithm.tools.exceptions) dict_class (RoleInputSchema property) (ServerRoleInputSchema property) disconnect() (NetworkManager method) docker_container_name (AlgorithmStoreContext property) (NodeContext property) (ServerContext property) docker_network_name (NodeContext property) docker_squid_volume_name (NodeContext property) docker_ssh_volume_name (NodeContext property) docker_temporary_volume_name() (NodeContext method) docker_volume_name (NodeContext property) docker_vpn_volume_name (NodeContext property) doRollover() (OwnershipPreservingRotatingFileHandler method) dummy_preprocess() (in module vantage6.algorithm.tools.preprocessing.functions) DummyCryptor (class in vantage6.common.encryption) dump() (RoleInputSchema method) (ServerRoleInputSchema method) dump_only (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) dumps() (RoleInputSchema method) (ServerRoleInputSchema method)

E

echo() (in module vantage6.common) edit() (StoreRoleSubClient method) emit() (OwnershipPreservingRotatingFileHandler method) encode() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) encrypt_bytes_to_str() (CryptorBase method) (DummyCryptor method) (RSACryptor method) encrypt_stream() (CryptorBase method) (DummyCryptor method) (RSACryptor method) endswith() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method)

ensure_config_dir_writable() (in module vantage6.common) EnvironmentVariableError EnvironmentVariableNotFoundError error() (ClickLogger static method) (in module vantage6.algorithm.tools.util) (in module vantage6.common) error_messages (RoleInputSchema attribute) (ServerRoleInputSchema attribute) exclude (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) exit_gracefully() (ContainerKillListener method) expandtabs() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method)

F

fields (RoleInputSchema attribute) (RoleInputSchema.Meta attribute) (ServerRoleInputSchema attribute) (ServerRoleInputSchema.Meta attribute) FileMetadata (class in vantage6.common.log) filter() (OwnershipPreservingRotatingFileHandler method) filter_by_attribute() (in module vantage6.backend.common.resource.role) filter_dict_keys() (in module vantage6.client.filter) filter_dicts_by_values() (in module vantage6.client.filter) filter_dicts_from_results() (in module vantage6.client.filter) filter_dicts_keys() (in module vantage6.client.filter) filter_dicts_on_values() (in module vantage6.client.filter) filter_keys_from_result() (in module vantage6.client.filter) filter_keys_from_results() (in module vantage6.client.filter) filter_range() (in module vantage6.algorithm.tools.preprocessing.functions) find() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) find_config_file() (AlgorithmStoreContext class method) (AppContext class method) (BaseServerContext class method) (NodeContext class method) (ServerContext class method) (TestContext class method) find_test_packages() (in module vantage6.common.utest) find_tests() (in module vantage6.common.utest) flush() (OwnershipPreservingRotatingFileHandler method) format() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (OwnershipPreservingRotatingFileHandler method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method)

format_map() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) from_bytes() (Ports method) from_dict() (RoleInputSchema class method) (ServerRoleInputSchema class method) from_external_config_file() (AlgorithmStoreContext class method) (AppContext class method) (BaseServerContext class method) (NodeContext class method) (ServerContext class method) (TestContext class method) from_file() (ConfigurationManager class method) (NodeConfigurationManager class method) (ServerConfigurationManager class method) (TestingConfigurationManager class method) from_query() (Pagination class method) from_task() (AlgorithmClient.Result method) (AlgorithmClient.Run method) (MockAlgorithmClient.Result method) (MockAlgorithmClient.Run method) (UserClient.Result method) (UserClient.Run method) fromkeys() (RuleCollectionBase method)

G

generate_apikey() (in module vantage6.common) generate_path_to() (AlgorithmClient method) (UserClient method) generate_private_key() (UserClient.Util method) get() (AlgorithmClient.Collaboration method) (AlgorithmClient.Organization method) (AlgorithmClient.Result method) (AlgorithmClient.Run method) (AlgorithmClient.Study method) (AlgorithmClient.Task method) (AlgorithmStoreSubClient method) (AlgorithmSubClient method) (Configuration method) (ConfigurationManager method) (MockAlgorithmClient.Collaboration method) (MockAlgorithmClient.Organization method) (MockAlgorithmClient.Result method) (MockAlgorithmClient.Run method) (MockAlgorithmClient.Task method) (NodeConfiguration method) (NodeConfigurationManager method) (PolicySubClient method) (ReviewSubClient method) (RuleCollectionBase method) (ServerConfiguration method) (ServerConfigurationManager method) (StoreUserSubClient method) (StudySubClient method) (TestConfiguration method) (TestingConfigurationManager method) (UserClient.Collaboration method) (UserClient.Node method) (UserClient.Organization method) (UserClient.Result method) (UserClient.Role method) (UserClient.Rule method) (UserClient.Run method) (UserClient.Task method) (UserClient.User method) get_addresses() (AlgorithmClient.VPN method)

get_attribute() (RoleInputSchema method) (ServerRoleInputSchema method) get_child_addresses() (AlgorithmClient.VPN method) get_column_names() (in module vantage6.algorithm.tools.wrappers) get_config_path() (in module vantage6.common) get_container() (in module vantage6.common.docker.addons) get_container_ip() (NetworkManager method) get_context() (in module vantage6.cli.context) get_data_file() (AlgorithmStoreContext method) (AppContext method) (BaseServerContext method) (NodeContext method) (ServerContext method) (TestContext method) get_database_config() (in module vantage6.common) get_database_uri() (AlgorithmStoreContext method) (BaseServerContext method) (NodeContext method) (ServerContext method) get_digest() (in module vantage6.common.docker.addons) get_env_var() (in module vantage6.algorithm.tools.util) get_file_logger() (in module vantage6.common.log) get_gauge() (Metrics method) get_image_name_wo_tag() (in module vantage6.common.docker.addons) get_network() (in module vantage6.common.docker.addons) get_networks_of_container() (in module vantage6.common.docker.addons) get_new_collection() (PermissionManagerBase method) get_num_nonempty_networks() (in module vantage6.common.docker.addons) get_ohdsi_metadata() (in module vantage6.algorithm.tools.decorators) get_own_address() (AlgorithmClient.VPN method) get_parent_address() (AlgorithmClient.VPN method) get_role() (in module vantage6.backend.common.resource.role) get_rule() (in module vantage6.backend.common.resource.role) get_rules() (in module vantage6.backend.common.resource.role) get_rules_from_ids() (in module vantage6.backend.common.resource.role) get_server_config_name() (in module vantage6.common.docker.addons) get_server_health() (UserClient.Util method) get_server_url() (in module vantage6.backend.common) get_server_version() (UserClient.Util method) get_sibling_addresses() (AlgorithmClient.VPN method)

H

handle() (OwnershipPreservingRotatingFileHandler method) handle_error() (RoleInputSchema method) (ServerRoleInputSchema method) handle_exceptions() (in module vantage6.backend.common.resource.error_handling) handleError() (OwnershipPreservingRotatingFileHandler method) has_task_failed() (in module vantage6.common.task_status)

has_task_finished() (in module vantage6.common.task_status) headers (AlgorithmClient property) (Pagination property) (UserClient property) help() (BaseModelBase class method) host (AlgorithmClient property) (UserClient property)

I

id_ (WhoAmI attribute) imag (Ports attribute) in_flask_request() (BaseDatabaseSessionManager static method) include (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) index() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (RuleNeed method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) (WhoAmI method) index_errors (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) info() (ClickLogger static method) (in module vantage6.algorithm.tools.util) (in module vantage6.common) initialize() (AlgorithmStoreContext method) (AppContext method) (BaseServerContext method) (NodeContext method) (ServerContext method) (TestContext method) InputError INST_CONFIG_MANAGER (AlgorithmStoreContext attribute) (AppContext attribute) (BaseServerContext attribute) (NodeContext attribute) (ServerContext attribute) (TestContext attribute) instance_folders() (AlgorithmStoreContext static method) (AppContext static method) (BaseServerContext static method) (NodeContext static method) (ServerContext static method) (TestContext static method) InstanceType (class in vantage6.common.globals) invalidate() (AlgorithmSubClient method) is_column_missing() (BaseDatabase static method) is_empty (ConfigurationManager property) (NodeConfigurationManager property) (ServerConfigurationManager property) (TestingConfigurationManager property) is_ip_address() (in module vantage6.common) is_running() (RabbitMQManager method) is_valid (Configuration property) (NodeConfiguration property) (ServerConfiguration property) (TestConfiguration property) isalnum() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) isalpha() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) isascii() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) isdecimal() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method)

isdigit() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) isidentifier() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) islower() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) isnumeric() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) isprintable() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) isspace() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) istitle() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) isupper() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) items() (Configuration method) (NodeConfiguration method) (RuleCollectionBase method) (ServerConfiguration method) (TestConfiguration method)

J

join() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method)

jsonable() (in module vantage6.backend.common.jsonable)

K

keys() (Configuration method) (NodeConfiguration method) (RuleCollectionBase method) (ServerConfiguration method) (TestConfiguration method)

kill() (UserClient.Task method) kill_tasks() (UserClient.Node method)

L

link_header (Pagination property) list() (AlgorithmClient.Organization method) (AlgorithmClient.Study method) (AlgorithmStoreSubClient method) (AlgorithmSubClient method) (MockAlgorithmClient.Organization method) (ReviewSubClient method) (StoreRoleSubClient method) (StoreRuleSubClient method) (StoreUserSubClient method) (StudySubClient method) (UserClient.Collaboration method) (UserClient.Node method) (UserClient.Organization method) (UserClient.Role method) (UserClient.Rule method) (UserClient.Run method) (UserClient.Task method) (UserClient.User method) ljust() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) load() (ConfigurationManager method) (NodeConfigurationManager method) (RoleInputSchema method) (ServerConfigurationManager method) (ServerRoleInputSchema method) (TestingConfigurationManager method) load_csv_data() (in module vantage6.algorithm.tools.wrappers) load_data() (in module vantage6.algorithm.tools.wrappers) load_excel_data() (in module vantage6.algorithm.tools.wrappers) load_input() (in module vantage6.algorithm.tools.wrap) load_only (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute)

load_parquet_data() (in module vantage6.algorithm.tools.wrappers) load_rules_from_resources() (PermissionManagerBase method) load_sparql_data() (in module vantage6.algorithm.tools.wrappers) load_sql_data() (in module vantage6.algorithm.tools.wrappers) loads() (RoleInputSchema method) (ServerRoleInputSchema method) log_file (AlgorithmStoreContext property) (AppContext property) (BaseServerContext property) (NodeContext property) (ServerContext property) (TestContext property) log_file_name() (AlgorithmStoreContext method) (AppContext method) (BaseServerContext method) (NodeContext method) (ServerContext method) (TestContext method) logger_name() (in module vantage6.common) LogLevel (class in vantage6.client.utils) lower() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) lstrip() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method)

M

maketrans() (AlgorithmViewPolicies static method) (AlgoStoreGlobals static method) (AuthStatus static method) (DatabaseType static method) (DefaultDatasets static method) (InstanceType static method) (NodePolicy static method) (ServerGlobals static method) (ServerType static method) (StorePolicies static method) (TaskStatus static method) many (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) MaxIterationsReached metadata() (in module vantage6.algorithm.tools.decorators) metadata_links (Pagination property) MethodNotFoundError Metric (class in vantage6.backend.common.metrics) Metrics (class in vantage6.backend.common.metrics) MockAlgorithmClient (class in vantage6.algorithm.tools.mock_client) MockAlgorithmClient.Collaboration (class in vantage6.algorithm.tools.mock_client) MockAlgorithmClient.Organization (class in vantage6.algorithm.tools.mock_client) MockAlgorithmClient.Result (class in vantage6.algorithm.tools.mock_client) MockAlgorithmClient.Run (class in vantage6.algorithm.tools.mock_client) MockAlgorithmClient.SubClient (class in vantage6.algorithm.tools.mock_client) MockAlgorithmClient.Task (class in vantage6.algorithm.tools.mock_client) module vantage6.algorithm.client vantage6.algorithm.tools vantage6.algorithm.tools.decorators vantage6.algorithm.tools.exceptions vantage6.algorithm.tools.mock_client vantage6.algorithm.tools.preprocessing vantage6.algorithm.tools.preprocessing.functions vantage6.algorithm.tools.util vantage6.algorithm.tools.wrap vantage6.algorithm.tools.wrappers vantage6.backend.common vantage6.backend.common.base vantage6.backend.common.globals vantage6.backend.common.jsonable vantage6.backend.common.metrics vantage6.backend.common.permission vantage6.backend.common.permission_models vantage6.backend.common.resource vantage6.backend.common.resource.error_handling vantage6.backend.common.resource.input_schema vantage6.backend.common.resource.pagination vantage6.backend.common.resource.role vantage6.backend.common.session vantage6.backend.common.test_context vantage6.cli vantage6.cli.cli vantage6.cli.configuration_manager vantage6.cli.configuration_wizard vantage6.cli.context vantage6.cli.context.algorithm_store vantage6.cli.context.base_server vantage6.cli.context.node vantage6.cli.context.server vantage6.cli.globals vantage6.cli.rabbitmq vantage6.cli.rabbitmq.definitions vantage6.cli.rabbitmq.queue_manager vantage6.cli.utils vantage6.client vantage6.client.exceptions vantage6.client.filter vantage6.client.subclients vantage6.client.subclients.store vantage6.client.subclients.store.algorithm vantage6.client.subclients.store.algorithm_store vantage6.client.subclients.store.policy vantage6.client.subclients.store.review vantage6.client.subclients.store.role vantage6.client.subclients.store.rule vantage6.client.subclients.store.user vantage6.client.subclients.study vantage6.client.utils vantage6.common vantage6.common.colors vantage6.common.configuration_manager vantage6.common.context vantage6.common.docker vantage6.common.docker.addons vantage6.common.docker.network_manager vantage6.common.encryption vantage6.common.enum vantage6.common.exceptions vantage6.common.globals vantage6.common.log vantage6.common.serialization vantage6.common.task_status vantage6.common.utest

mro() (Singleton method)

N

name (AlgorithmClient property) (RuleNeed attribute) (UserClient property) (WhoAmI attribute) NetworkManager (class in vantage6.common.docker.network_manager) node_configuration_questionaire() (in module vantage6.cli.configuration_wizard)

NodeConfiguration (class in vantage6.cli.configuration_manager) NodeConfigurationManager (class in vantage6.cli.configuration_manager) NodeContext (class in vantage6.cli.context.node) NodePermissionException NodePolicy (class in vantage6.common.globals) NotFoundError numerator (Ports attribute)

O

OHDSIMetaData (class in vantage6.algorithm.tools.decorators) on_bind_field() (RoleInputSchema method) (ServerRoleInputSchema method) operation (RuleNeed attribute) OPTIONS_CLASS (RoleInputSchema attribute) (ServerRoleInputSchema attribute)

ordered (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) organization_id (WhoAmI attribute) organization_name (WhoAmI attribute) OwnershipPreservingRotatingFileHandler (class in vantage6.common.log)

P

Page (class in vantage6.backend.common.resource.pagination) Pagination (class in vantage6.backend.common.resource.pagination) parse_image_name() (in module vantage6.common.docker.addons) partition() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) path (AlgorithmClient property) (UserClient property) PermissionManagerBase (class in vantage6.backend.common.permission) PolicySubClient (class in vantage6.client.subclients.store.policy) pop() (Configuration method) (NodeConfiguration method) (RuleCollectionBase method) (ServerConfiguration method) (TestConfiguration method) popitem() (Configuration method) (NodeConfiguration method) (RuleCollectionBase method) (ServerConfiguration method) (TestConfiguration method)

port (AlgorithmClient property) (UserClient property) Ports (class in vantage6.common.globals) post_filtering() (in module vantage6.client.filter) preprocess_data() (in module vantage6.algorithm.tools.preprocessing) print_log_header() (AlgorithmStoreContext method) (AppContext method) (BaseServerContext method) (NodeContext method) (ServerContext method) (TestContext method) printErrors() (TestResult method) PrivacyThresholdViolation PrivacyViolation prometheus_container_name (ServerContext property) prometheus_dir (ServerContext property) prompt_config_name() (in module vantage6.cli.utils) public_key_bytes (RSACryptor property) public_key_str (RSACryptor property) pull_image() (in module vantage6.common.docker.addons) put() (ConfigurationManager method) (NodeConfigurationManager method) (ServerConfigurationManager method) (TestingConfigurationManager method)

R

RabbitMQManager (class in vantage6.cli.rabbitmq.queue_manager) real (Ports attribute) refresh_token() (AlgorithmClient method) (UserClient method) register (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) register() (StoreUserSubClient method) register_rule() (PermissionManagerBase method) reject() (ReviewSubClient method) release() (OwnershipPreservingRotatingFileHandler method) remove_container() (in module vantage6.common.docker.addons) remove_container_if_exists() (in module vantage6.common.docker.addons) remove_file() (in module vantage6.cli.utils) remove_organization() (StudySubClient method) (UserClient.Collaboration method) remove_subnet_mask() (in module vantage6.common.docker.network_manager) removeFilter() (OwnershipPreservingRotatingFileHandler method) removeprefix() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) removesuffix() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) render_module (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) replace() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) request() (AlgorithmClient method) (UserClient method) reset_my_password() (UserClient.Util method) reset_two_factor_auth() (UserClient.Util method) resultclass (TestRunner attribute) ReviewSubClient (class in vantage6.client.subclients.store.review) rfind() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method)

rindex() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) rjust() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) RoleInputSchema (class in vantage6.backend.common.resource.input_schema) RoleInputSchema.Meta (class in vantage6.backend.common.resource.input_schema) RoleInterface (class in vantage6.backend.common.permission_models) rotate() (OwnershipPreservingRotatingFileHandler method) rotation_filename() (OwnershipPreservingRotatingFileHandler method) rpartition() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) RSACryptor (class in vantage6.common.encryption) rsplit() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) rstrip() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) RuleCollectionBase (class in vantage6.backend.common.permission) RuleInterface (class in vantage6.backend.common.permission_models) RuleNeed (class in vantage6.backend.common.permission) run() (in module vantage6.common.utest) (TestRunner method) run_tests() (in module vantage6.common.utest) RunMetaData (class in vantage6.algorithm.tools.decorators) running_in_docker() (in module vantage6.common.docker.addons)

S

save() (ConfigurationManager method) (NodeConfigurationManager method) (ServerConfigurationManager method) (TestingConfigurationManager method) scope (RuleNeed attribute) select_configuration_questionaire() (in module vantage6.cli.configuration_wizard) select_context_class() (in module vantage6.cli.context) serialize() (in module vantage6.common.serialization) server_configuration_questionaire() (in module vantage6.cli.configuration_wizard) ServerConfiguration (class in vantage6.cli.configuration_manager) ServerConfigurationManager (class in vantage6.cli.configuration_manager) ServerContext (class in vantage6.cli.context.server) ServerGlobals (class in vantage6.cli.globals) ServerRoleInputSchema (class in vantage6.backend.common.resource.input_schema) ServerRoleInputSchema.Meta (class in vantage6.backend.common.resource.input_schema) ServerType (class in vantage6.cli.globals) set() (AlgorithmStoreSubClient method) set_class (RoleInputSchema attribute) (ServerRoleInputSchema attribute) set_folders() (AlgorithmStoreContext method) (AppContext method) (BaseServerContext method) (NodeContext method) (ServerContext method) (TestContext method) set_metric() (Metrics method) set_my_password() (UserClient.Util method) set_two_factor_auth() (UserClient.Util method) setdefault() (Configuration method) (NodeConfiguration method) (RuleCollectionBase method) (ServerConfiguration method) (TestConfiguration method) setFormatter() (OwnershipPreservingRotatingFileHandler method) setLevel() (OwnershipPreservingRotatingFileHandler method) setStream() (OwnershipPreservingRotatingFileHandler method) setup_collaboration() (UserClient method) setup_encryption() (AlgorithmClient method) (UserClient method) setup_logging() (AlgorithmStoreContext method) (AppContext method) (BaseServerContext method) (NodeContext method) (ServerContext method) (TestContext method) shouldRollover() (OwnershipPreservingRotatingFileHandler method) Singleton (class in vantage6.common) split() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) split_rabbitmq_uri() (in module vantage6.common) splitlines() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method)

start() (RabbitMQManager method) start_prometheus_exporter() (in module vantage6.backend.common.metrics) startswith() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) startTest() (TestResult method) startTestRun() (TestResult method) stop() (TestResult method) stop_container() (in module vantage6.common.docker.addons) stopTest() (TestResult method) stopTestRun() (TestResult method) StorePolicies (class in vantage6.common.enum) StoreRoleSubClient (class in vantage6.client.subclients.store.role) StoreRuleSubClient (class in vantage6.client.subclients.store.rule) StoreUserSubClient (class in vantage6.client.subclients.store.user) str_to_bytes() (CryptorBase static method) (DummyCryptor static method) (RSACryptor static method) strip() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) StudySubClient (class in vantage6.client.subclients.study) SubtakCreationError swapcase() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method)

T

TaskStatus (class in vantage6.common.task_status) test_config_location() (TestContext static method) TestConfiguration (class in vantage6.cli.configuration_manager) TestContext (class in vantage6.backend.common.test_context) TestingConfigurationManager (class in vantage6.cli.configuration_manager) TestResult (class in vantage6.common.utest) TestRunner (class in vantage6.common.utest) timeformat (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) title() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method)

to_bytes() (Ports method) token (AlgorithmClient property) (UserClient property) translate() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method) type_ (WhoAmI attribute) type_data_folder() (AlgorithmStoreContext static method) (AppContext static method) (BaseServerContext static method) (NodeContext static method) (ServerContext static method) (TestContext static method)

U

UnauthorizedError unknown (RoleInputSchema.Meta attribute) (ServerRoleInputSchema.Meta attribute) update() (AlgorithmStoreSubClient method) (AlgorithmSubClient method) (Configuration method) (NodeConfiguration method) (RuleCollectionBase method) (ServerConfiguration method) (StoreUserSubClient method) (StudySubClient method) (TestConfiguration method) (UserClient.Collaboration method) (UserClient.Node method) (UserClient.Organization method) (UserClient.Role method) (UserClient.User method) update_role() (in module vantage6.backend.common.resource.role) upper() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method)

UserClient (class in vantage6.client) UserClient.Collaboration (class in vantage6.client) UserClient.Node (class in vantage6.client) UserClient.Organization (class in vantage6.client) UserClient.Result (class in vantage6.client) UserClient.Role (class in vantage6.client) UserClient.Rule (class in vantage6.client) UserClient.Run (class in vantage6.client) UserClient.SubClient (class in vantage6.client) UserClient.Task (class in vantage6.client) UserClient.User (class in vantage6.client) UserClient.Util (class in vantage6.client) UserInputError

V

validate() (RoleInputSchema method) (ServerRoleInputSchema method) validate_name() (in module vantage6.backend.common.resource.input_schema) (RoleInputSchema method) (ServerRoleInputSchema method) validate_request_body() (in module vantage6.backend.common.resource.role) validate_user_exists() (in module vantage6.backend.common.resource.role) values() (Configuration method) (NodeConfiguration method) (RuleCollectionBase method) (ServerConfiguration method) (TestConfiguration method) vantage6.algorithm.client module vantage6.algorithm.tools module vantage6.algorithm.tools.decorators module vantage6.algorithm.tools.exceptions module vantage6.algorithm.tools.mock_client module vantage6.algorithm.tools.preprocessing module vantage6.algorithm.tools.preprocessing.functions module vantage6.algorithm.tools.util module vantage6.algorithm.tools.wrap module vantage6.algorithm.tools.wrappers module vantage6.backend.common module vantage6.backend.common.base module vantage6.backend.common.globals module vantage6.backend.common.jsonable module vantage6.backend.common.metrics module vantage6.backend.common.permission module vantage6.backend.common.permission_models module vantage6.backend.common.resource module vantage6.backend.common.resource.error_handling module vantage6.backend.common.resource.input_schema module vantage6.backend.common.resource.pagination module vantage6.backend.common.resource.role module vantage6.backend.common.session module vantage6.backend.common.test_context module vantage6.cli module vantage6.cli.cli module vantage6.cli.configuration_manager module vantage6.cli.configuration_wizard module vantage6.cli.context module vantage6.cli.context.algorithm_store module vantage6.cli.context.base_server module

vantage6.cli.context.node module vantage6.cli.context.server module vantage6.cli.globals module vantage6.cli.rabbitmq module vantage6.cli.rabbitmq.definitions module vantage6.cli.rabbitmq.queue_manager module vantage6.cli.utils module vantage6.client module vantage6.client.exceptions module vantage6.client.filter module vantage6.client.subclients module vantage6.client.subclients.store module vantage6.client.subclients.store.algorithm module vantage6.client.subclients.store.algorithm_store module vantage6.client.subclients.store.policy module vantage6.client.subclients.store.review module vantage6.client.subclients.store.role module vantage6.client.subclients.store.rule module vantage6.client.subclients.store.user module vantage6.client.subclients.study module vantage6.client.utils module vantage6.common module vantage6.common.colors module vantage6.common.configuration_manager module vantage6.common.context module vantage6.common.docker module vantage6.common.docker.addons module vantage6.common.docker.network_manager module vantage6.common.encryption module vantage6.common.enum module vantage6.common.exceptions module vantage6.common.globals module vantage6.common.log module vantage6.common.serialization module vantage6.common.task_status module vantage6.common.utest module verify_public_key() (RSACryptor method)

W

wait_for_results() (AlgorithmClient method) (MockAlgorithmClient method) (UserClient method) wait_for_task_completion() (AlgorithmClient method) (UserClient method)

warn() (ClickLogger static method) (in module vantage6.algorithm.tools.util) warning() (in module vantage6.common) wasSuccessful() (TestResult method) WhoAmI (class in vantage6.common) wrap_algorithm() (in module vantage6.algorithm.tools.wrap)

Z

zfill() (AlgorithmViewPolicies method) (AlgoStoreGlobals method) (AuthStatus method) (DatabaseType method) (DefaultDatasets method) (InstanceType method) (NodePolicy method) (ServerGlobals method) (ServerType method) (StorePolicies method) (TaskStatus method)