Algorithm development status

This is a roadmap of the algorithms that are to be implemented in vantage6

Descriptive statistics

Description

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Vertical

Program used

Software Implementation

vantage6

Mean

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Python

DataSHIELD

Standard deviation

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Python

DataSHIELD

IQR count

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Python

DataSHIELD

Percentages

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Python

DataSHIELD

Median

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Python

DataSHIELD

Minimum

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Python

DataSHIELD

Maximum

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Python

DataSHIELD

Contingency tables

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Python

DataSHIELD

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Proportion

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DataSHIELD

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Odds ratio

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DataSHIELD

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Visualization

Description

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Vertical

Program used

Software Implementation

vantage6

Histogram

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DataSHIELD

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Contour plot

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DataSHIELD

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Heat map

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DataSHIELD

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Scatter plot

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DataSHIELD

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Box plot

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DataSHIELD

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Violin plot

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Hypothesis tests

Description

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Vertical

Program used

Software Implementation

vantage6

T-test

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DataSHIELD

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Chi-square

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R

vantage6

Z-test

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DataSHIELD

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ANOVA

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DataSHIELD

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Fisher's Exact test

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DataSHIELD

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Pearson Correlation

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SCS

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Log-Rank test

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Wald test

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Variable selection

Description

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Vertical

Program used

Software Implementation

vantage6

AIC

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DataSHIELD

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Likelihood Ratio test

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DataSHIELD

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Models

Description

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Vertical

Program used

Software Implementation

vantage6

Linear Regression

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R

DataSHIELD

Logistic Regression

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R

DataSHIELD

GLM

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R

DataSHIELD

GLMM

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DataSHIELD

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Survival models

Description

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Vertical

Program used

Software Implementation

vantage6

Kaplan Meier

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tranSMART

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Cox Proportional Hazards regression

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R

WebDISCO

Partial Likelihood estimates

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